PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1366_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 366aa    MW: 41013.4 Da    PI: 8.1908
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1366_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.3e-12190236455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h+  Er+RR++i +++  L++llP++      K +K++ L +A++Y++ Lq
  RrC1366_p2 190 VHKLSERKRRHEISKKMRALQDLLPNC-----YKDDKVSLLDEAIKYMRTLQ 236
                 6999**********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.12E-12184240No hitNo description
SuperFamilySSF474596.41E-17184259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15190246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9190236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-11192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010017Biological Processred or far-red light signaling pathway
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MELVCENGKI LAKSRKTNNI GYFQNQRTQS ILDLYETEYD ESFKKNIKNL DETQVVPVSD  60
EQTNNKNRTS SKNRIERDIL KGNKRFESPT LNDDSLNGLK YVEVSTAPPD EQSEAIGRST  120
KLYCTPSSML SRGTSRDLGC SLKKRKCGDN EEEETTYLSN NSDDESDDAK TRVPAKTRKT  180
MAKRKQSTEV HKLSERKRRH EISKKMRALQ DLLPNCYKDD KVSLLDEAIK YMRTLQLQVQ  240
MMSMGNVLIQ PSMILPMGNY SPMGLGMHMG AAATAPVPQF MPMNVQGTGF HGINNASSQM  300
LSAFLNHPTG LIPNSPIFSP LESCSQQLVV PSCFPETQAT SFSQFPMSGS TSNFEDAMQF  360
RGSCGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182198KRKQSTEVHKLSERKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013751989.10.0PREDICTED: transcription factor PIL1-like
SwissprotQ8L5W80.0PIL1_ARATH; Transcription factor PIL1
TrEMBLA0A078CVP70.0A0A078CVP7_BRANA; BnaA05g00920D protein
STRINGBra004489.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139371725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46970.10.0phytochrome interacting factor 3-like 1